#NEXUS

[Hesperideae alignment, status checked Jan 09 2018]
[ITS-1: 1-313, 5.8S rDNA: 314-477, ITS-2: 478-668]


BEGIN DATA;
DIMENSIONS NTAX=11 NCHAR=668;
FORMAT DATATYPE=DNA GAP=- MISSING=? ;

MATRIX
Hesperis_nivalis_HG426448        TCAATA---------------------AGCGGAGGAAGGA------------------------------------------------GAAGTCGTAACAAGGCATATCAATAAGCGGAGGAAGG--------------------CTGCGTCCCC---------TTC-GGCTCGAGGGGGCCGCACGCTCGGCTTCCGGATATAACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACCGAACGGCCCGCGTCCGCCGCAT-CCCGGAGACGGCCTGCGAGCGGACGCTGCGCTGCGATCTAAAGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGTCGTCCCCC--TCATCCTCT-ACGGATACGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCGAAATCCGAGCTCAGGACGCCCGGAGCGTCTCGGCATGCGGTGGCGAACACAAACCTCGTCGTACGGCCGGCCGCTCCTGTCCGAAAGCTCCTTACGACCCACAGAGTC-TTCA
Hesperis_persica_HG426449        TCGATACCTGTCCAAAACAGAACGACCAGCGAACGAACGATCATCACTC-CGGCGGGCCGGTTTCTTTGCGGATCCCGTGC-CCCGTCGAATCCGT--------------------GGTCGAGCG--------------------CTGCGTCCCC---------TTC-GTCTCGAGGGGGCCGCACGCTCGGCTTCCGGATATAACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACCGAACGGCCCGCGTCCGCCGCAT-CCCGGAGACGGCCTGCGAGCGGACGCTGCGCTGCGATCTAAAGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGTCGTCCCCC--TCATCCTCT-ACGGATACGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCGAAATCCGAGCTCAGGACGCCCGGAGCGTCTCGGCATGCGGTGGCGAACACAAACCTCGTCGTACGGCCGGCCGCTCCTGTCCGAAAGCTCCTTACGACCCACAGAGTC-TTCA
OUTBrassicanapusDQ003666         TCGTACCCTG---GAAACAGAACGACCTGAGAACGATGAAACATCACTCTCGGTAGGCCGGTTTCTTA-------CTGTGC-CT-GCTGATTCCGT--------------------GGTTATGCG--------------------TT-CATCCTTGGCCAAGACTTCAGTTTTGGTTGGATCGTACGCATAGCTTCCGGATATCACCAAACCCCGGCACGAAAAGTGTCAAGGAAAATGCAACTAAACAGCCTGCTTTCGCC---AACCCGGAGACGGTGTTTGTTCGGAAGCAGTGCTGCAATGTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCCC---CATCCTCTCGAGGATATCGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCAAAATCCTAGCTAAGGATGCCAGGAGCGTCTTGACATGCGGTGGTGAATTCAATTCTCGTCAAATCGTCAGTCGTTTCGGTCCGAAAGCTCTTGATGACC--CAAAGTC-CTCA
OUTArabidopsisthalianaAJ232900   TCGATACCTGTCCAAAACAGAACGACCCGCGAACCAAAGATCACCACTCTCGGTGGGCCGGTTTCTTAGCCGATTCCTTGC-CC-GCCGGATCCGT--------------------GGTTTCGCGTATCGGCATGATCGGGAGCTTT-TATC-------------TCGGTCTTG------TCGTGCGCGTTGCTTCCGGATATCACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAAACGAACGGCTGGCATTCGCC---TCCCCGGAGACGGAGTGTGGGCGGATGCTGTGCTGCGAACTGAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAATCGTCGTCCCTCAC-CATCCTTT-GCTGATGCGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCTAAATCCGAGCCAAGGACGCCTGGAGCGTACCGACATGCGGTGGTGAACTTGATCCATTACATTTTATCGGTCGCTCTTGTCCGGAAGCTGTAGATGACC--CAAAGTC-CATA
Tchihatchewia_isatidea_GQ497882  TCGATACCTGTCCGAAACAGAACGACCAGCGAACGAACGATCATCACTC-CGGCGGGCCGGTTTCTTAGCGGATCCCGTTCTCC-GTCGAATCCGT--------------------GGTCAAGCG--------------------CTGCGTCCCCGCTGAGGGACTC-GTCCCGATCGGATCGCGCGCTCGGCTTCCGGATATAACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACAGAACGGCCCGCGTCCGCCGCATCCCCGGAGACGGCTTGCGAGCGGACGCTGCGCTGCGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAACCGTCGTCCCCC--TCATCCTTT-ATGGATAAGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCGAAATCCGAGCTCAGAACGCCTGGAGCGTCTCGGCATGCGGTGGCGAACACAAACCTCGTCGTACGGCCGGTCGCTCCTGTCCGAAAGCTCCTNNNNNNNNNNNNNNNN-NNNN
Hesperis_laciniata_KF022709      TCGATACCTGTCCGAAACAGCACGACCAGCGAACGAACGATCATCACTC-CGGCGGGCCGATTTCTT-GCGGATCTCGTGC-CCCGTCGAATCCGT--------------------GGTCATGCG--------------------CTGCGTCCCCGCTAAGGGATTC-GTCTCGAGCGGGACGCGCGCTTGGCTTCCGGATATAACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACCGAACGGCCTGCGTCCGCCGCAT-CCCGGAGACGGCGTGCGAGCGGATGTTGCGCTGCGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAACCGTCGTCCCCC--TCATCCTTT-ATGGATACGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCGAAATCCGAGCTCAGGACGCCTGGAGCGTCTCGGCATGCGGTGGCGAATACAAACCTCGTCGTACGGCCGGCCGCTCCTGTCCGAAAGCTCCTTACGACCCACAGAGTC-CTCA
Hesperis_rechingeri_KF022710     TCGATACCTGTCCAAAACAGAACGACCAGCGAACGAACGATCATCACTC-CGGCGGGCCGATTTCTTCGCGGATCTCGTGC-CC-GTCGAATC-GT--------------------GGTCATGCG--------------------TTGCGTCCCCGCGAAGGGATTC-GTCTCGAGCGGGACGCATGCTTGGCTTCCGGATATAACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACCGAACGGCCCGC-TCCGCCGCAT-TCCGGAGACGGCGTGCGAGCGGATGTTGCGCTGCGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAACCGTCGTCCCCC--TCATCCTTT-ATGGATACGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCGAAATCTGAGCTCAGGACGCCTGGAGCGTCTCGGCATGCGGTGGCGAACACAAACCTCGTCGTACGGCCGGCCGCTCCTGTCCGAAAGCTCTGTATGACCCACATAGTC-CTCA
Hesperis_sibirica_DQ357549       TCGAAACCTGTCCTAAACAGAACGACCAGCGAACGAACGATCATCACTC-CGGCGGGCCGGTTTCTTAGCGGATCCCGTGC-CCCGTCGAATCCGT--------------------GGTCGAGCG--------------------CTGCGTCCCCGGGGAGGGATTC-GTCCCGACCGGGTCGCGCGCTCGGCTTCCGGATATAACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACCGAACGGCCCGCGTCCGCTTCAT-CCCGGAGACGGCTTGCGAGCGGACGCTGTGCTGCGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAACCGTCGTCCCCC--TCATCCTTT-ATGGATAYGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCGAAATCTGAGTTCAGGACGCCTGGAGCGTCTCGGCATGCGGTGGCGAATACAAATCTCGTCGTACGGCCGGCCGCTCCTGTCCGAAAGCTCCTTACGACCCACAGAGTTTCTCA
Hesperis_dinarica_KF022708       TCGATACCTGTCCAAAACAGAACGACCAGCGAACGAACGATCATCACTC-CGGCGGGCCGGTTTCTTAACGGATCCCGTGC-CC-GTCGAATCCGT--------------------GGTCGAGCG--------------------CCGCGTCCCCGCGATGGGATTC--TCTCGAGCGGGCCGTGCGCTCGGCTTCCGGATATAACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACCGAACGGCCCGCGTCCGCTGCAT-CCCGGAGACGGCTTGCGAGCGGACGCTGTGCTGCGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAACCGTCGTCCCCC--TCATCCTCT-ATGGATACGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCGAAATCCGAGCTCAGGACGC-TGGAGCGTCTCGGCATGCGGTGGCGAACACAAACCTCGTCGTACGGCCGGCCGCTCCTGTCCGAAAGCTCTTTACGACCCACAGAGTC-TTCA
Hesperis_matronalis_DQ357547     TCGAAACCTGTCCGAAACAGAACGACCAGCGAACGAACGATCATCACTC-CGGCGGGCCGGTTTCTTAGCGGATCCCGTGC-CCYGTCGAATCCGT--------------------GGTCGAGCG--------------------CTGCGTCCCCGCGGAGGGATTC-GTCTCGAGCGGGCCGCGCGCTTGGCTTCCGGATATAACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACCGAACGGCCCGCGTCCGCCGCAT-CCCGGAGACGGCTTGCGAGCGGACGCTGTGCTGCGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAACCGTCGTCCCCC--TCATCCTCT-ACGGATACGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCGAAATCCGAGCTCAGGACGCCTGGAGCGTCTCGGCATGCGGTGGCGAACACAAACCTCGTCCTACGGCCGGCCGCTCCTGTCCGAAAGCTCCTTACGACCCACAGAGTC-ATCA
Hesperis_voronovii_DQ357550      TCGAAACCTGTCCGAAACAGAACGACCAGCGAACGAACGATCATCACTC-CGGCGGGCCGGTTTCTTAGCGGATCCCGTGC-CCCGTCGAATCCGT--------------------GGTCGAGCG--------------------CTGCGTCCCCGCGGAGGGATTC-GTCTCGAGCGGGCCGCGCGCTTGGCTTCCGGATATAACAAAACCCCGGCACGAAAAGTGTCAAGGAACATGCAACCGAACGGCCCGCGTCCGCCGCAT-CCCGGAGACGGCTTGCGAGCGGACGCTGTGCTGCGATCTAAAGTCTAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTCTGGCCGAGGGCACGTCTGCCTGGGTGTCACAAACCGTCGTCCCCC--TCATCCTCT-ACGGATACGGGACGGAAGCTGGTCTCCCGTGTGTTACCGCACGCGGTTGGCCGAAATCCGAGCTCAGGACGCCCGGAGCGTCTCGGCATGCGGTGGCGAACACAAACCTCGTCGTACGGCCGGCCGCTCCT-TTCGAAAGCTCCTTACGACCCACAGAGTC-ATCA
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